Research publications | Alfred Health

Linear plasmids in Klebsiella and other Enterobacteriaceae

Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R; Judd, Louise M; Cerdeira, Louise; de Oliveira Garcia, Doroti; Wyres, Kelly L; Holt, Kathryn E

(2022), MICROB GENOMICS, 8(4)

DOI: 10.1099/mgen.0.000807

Genomic epidemiology and temperature dependency of hypermucoviscous Klebsiella pneumoniae in Japan

Le, Mi Nguyen Tra; Kayama, Shizuo; Wyres, Kelly L; Yu, Liansheng; Hisatsune, Junzo; Suzuki, Masato; Yahara, Koji; Terachi, Tsuneko; Sawa, Kana; Takahashi, Shin; Okuhara, Toshihiko; Kohama, Kunihiko; Holt, Kathryn E; Mizutani, Tetsu; Ohge, Hiroki; Sugai,

(2022), MICROB GENOMICS, 8(5), 827

DOI: 10.1099/mgen.0.000827

Genomic and phenotypic analyses of diverse non-clinical Acinetobacter baumannii strains reveals strain-specific virulence and resistance capacity

Hamidian, Mohammad; Maharjan, Ram P; Farrugia, Daniel N; Delgado, Natasha N; Dinh, Hue; Short, Francesca L; Kostoulias, Xenia; Peleg, Anton Y; Paulsen, Ian T; Cain, Amy K

(2022), MICROB GENOMICS, 8(2), 765

DOI: 10.1099/mgen.0.000765

The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi

da Silva, Kesia Esther; Tanmoy, Arif Mohammad; Pragasam, Agila Kumari; Iqbal, Junaid; Sajib, Mohammad Saiful Islam; Mutreja, Ankur; Veeraraghavan, Balaji; Tamrakar, Dipesh; Qamar, Farah Naz; Dougan, Gordon; Bogoch, Isaac; Seidman, Jessica C; Shakya, Jiva

(2022), LANCET MICROBE, 3(8), e567-e577

DOI: 10.1016/S2666-5247(22)00093-3

Regional differences in carbapenem-resistant Klebsiella pneumoniae

Wyres, Kelly L; Holt, Kathryn E

(2022), LANCET INFECT DIS, 22(3), 309-310

DOI: 10.1016/S1473-3099(21)00425-4

Global burden of antimicrobial resistance: essential pieces of a global puzzle

Walsh, Timothy R; Zahra, Rabaab; Iregbu, Kenneth; Peacock, Sharon J; Stewardson, Andrew

(2022), LANCET, 399(10344), 2347-2348

DOI: 10.1016/S0140-6736(22)00939-4

Effectiveness of Influenza Vaccination in Reducing Subsequent Antibiotic Prescribing in Young Children Attending Australian General Practices - A Case-Control Study

Gianacas, Christopher; Muscatello, David; Blogg, Suzanne; Kirk, Martyn; McIntyre, Peter; Cheng, Allen; Liu, Bette

(2022), J PEDIAT INF DIS SOC, 11(6), 283-290

DOI: 10.1093/jpids/piac021

Comparative Immunogenicity and Effectiveness of mRNA-1273, BNT162b2, and Ad26COV2S COVID-19 Vaccines

Naranbhai, Vivek; Garcia-Beltran, Wilfredo F; Chang, Christina C; Berrios Mairena, Cristhian; Thierauf, Julia C; Kirkpatrick, Grace; Onozato, Maristela L; Cheng, Ju; St Denis, Kerri J; Lam, Evan C; Kaseke, Clarety; Tano-Menka, Rhoda; Yang, Diane; Pa

(2022), J INFECT DIS, 225(7), 1141-1150

DOI: 10.1093/infdis/jiab593

Balancing statistical power and risk in HIV cure clinical trial design

Lau, Jillian S Y; Cromer, Deborah; Pinkevych, Mykola; Lewin, Sharon R; Rasmussen, Thomas A; McMahon, James H; Davenport, Miles P

(2022), J INFECT DIS, 226(2), 236-245

DOI: 10.1093/infdis/jiac032

Cutting Edge: SARS-CoV-2 Infection Induces Robust Germinal Center Activity in the Human Tonsil

Tan, Hyon Xhi; Wragg, Kathleen M; Kelly, Hannah G; Esterbauer, Robyn; Dixon, Benjamin J; Lau, Jillian SY; Flanagan, Katie L; van de Sandt, Carolien E; Kedzierska, Katherine; McMahon, James H; Wheatley, Adam K; Juno, Jennifer A; Kent, Stephen J

(2022), J IMMUNOL, 208(10), 2267-2271

DOI: 10.4049/jimmunol.2101199

Combination Immune Checkpoint Blockade Enhances IL-2 and CD107a Production from HIV-Specific T Cells Ex Vivo in People Living with HIV on Antiretroviral Therapy

Chiu, Chris Y; Chang, Judy J; Dantanarayana, Ashanti I; Solomon, Ajantha; Evans, Vanessa A; Pascoe, Rachel; Gubser, Céline; Trautman, Lydie; Fromentin, Rémi; Chomont, Nicolas; McMahon, James H; Cameron, Paul U; Rasmussen, Thomas A; Lewin, Sharon R

(2022), J IMMUNOL, 208(1), 54-62

DOI: 10.4049/jimmunol.2100367

Real-world experience of Quantiferon-CMV directed prophylaxis in lung transplant recipients

Gardiner, Bradley J; Lee, Sue J; Robertson, Allisa N; Cristiano, Yvonne; Snell, Gregory I; Morrissey, C Orla; Peleg, Anton Y; Westall, Glen P

(2022), J HEART LUNG TRANSPL, 41(9), 1258-1267

DOI: 10.1016/j.healun.2022.05.004

Attributable mortality and excess length of stay associated with third-generation cephalosporin-resistant Enterobacterales bloodstream infections

Loftus, Michael J; Young-Sharma, Tracey EMW; Lee, Sue J; Wati, Shitanjni; Badoordeen, Gnei Z; Blakeway, Luke V; Byers, Sally MH; Cheng, Allen C; Cooper, Ben S; Cottingham, Hugh; Jenney, Adam WJ; Hawkey, Jane; Macesic, Nenad; Naidu, Ravi; Pras

(2022), J GLOB ANTIMICROB RE, (30), 286-293

DOI: 10.1016/j.jgar.2022.06.016

A desirability of outcome ranking (DOOR) for periprosthetic joint infection - a Delphi analysis

Johns, Brenton P; Dewar, David C; Loewenthal, Mark R; Manning, Laurens A; Atrey, Amit; Atri, Nipun; Campbell, David G; Dunbar, Michael; Kandel, Christopher; Khoshbin, Amir; Jones, Christopher W; Lora-Tamayo, Jaime; McDougall, Catherine; Moojen, Dirk

(2022), Journal of Bone and Joint Infection, 7(6), 221-229

DOI: 10.5194/jbji-7-221-2022

Comment on: Genetically related micafungin-resistant Candida parapsilosis blood isolates harbouring novel mutation R658G in hotspot 1 of Fks1p: a new challenge?

Liang, James; Macesic, Nenad; Blakeway, Luke

(2022), J ANTIMICROB CHEMOTH, 77(6), 1790

DOI: 10.1093/jac/dkac091

Oral fosfomycin activity against Klebsiella pneumoniae in a dynamic bladder infection in vitro model

Abbott, Iain J; van Gorp, Elke; Wyres, Kelly L; Wallis, Steven C; Roberts, Jason A; Meletiadis, Joseph; Peleg, Anton Y

(2022), J ANTIMICROB CHEMOTH, 77(5), 1324-1333

DOI: 10.1093/jac/dkac045

A nationwide genomic study of clinical Klebsiella pneumoniae in Norway 2001-15: introduction and spread of ESBLs facilitated by clonal groups CG15 and CG307

Fostervold, Aasmund; Hetland, Marit AK; Bakksjø, Ragna; Bernhoff, Eva; Holt, Kathryn E; Samuelsen, Ørjan; Simonsen, Gunnar Skov; Sundsfjord, Arnfinn; Wyres, Kelly L; Löhr, Iren Høyland; ,

(2022), J ANTIMICROB CHEMOTH, 77(3), 665-674

DOI: 10.1093/jac/dkab463

Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

Holt, Kathryn E; Lassalle, Florent; Wyres, Kelly L; Wick, Ryan; Mostowy, Rafal J

(2022), ISME J, 16(5), 1478

DOI: 10.1038/s41396-021-01181-9

Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community

Barber, Jake N; Nicholson, Luke C; Woods, Laura C; Judd, Louise M; Sezmis, Aysha L; Hawkey, Jane; Holt, Kathryn E; McDonald, Michael J

(2022), ISME J, 16), 1442–1452

DOI: 10.1038/s41396-022-01191-1

Cytomegalovirus in inflammatory bowel disease: a clinical approach

Gilmore, Robert B; Taylor, Kirstin M; Morrissey, C Orla; Gardiner, Bradley J

(2022), INTERN MED J, 52(3), 365-368

DOI: 10.1111/imj.15085