Research publications

Alfred Health research outcomes are published in a wide range of peer reviewed journals. 

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Treatment of invasive IMP-4 Enterobacter cloacae infection in transplant recipients using ceftazidime/avibactam with aztreonam

Cairns, Kelly A.; Hall, Victoria; Martin, Genevieve E.; Griffin, David W.J.; Stewart, James D.; Khan, Sadid F.; Abbott, Iain J.; Meher-Homji, Zaal; Morrissey, Catherine O.; Sia, Christopher; Love, Jane; Corallo, Carmela E.; Bergin, Peter; Sharma, Ashish;

(2020), TRANSPL INFECT DIS, 23(2), e13510.

DOI: 10.1111/tid.13510

Tocilizumab for severe COVID-19 pneumonia: Case series of 5 Australian patients

West, Timothy A.; Malik, Sameer; Nalpantidis, Anastasios; Tran, Tuan; Cannon, Christine; Bhonagiri, Deepak; Chan, Kevin; Cheong, Elaine; Wan Sai Cheong, Jenny; Cheung, Winston; Choudhury, Faisal; Ernest, David; Farah, Claude S.; Fernando, Shelanah; Kanapa

(2020), INT J RHEUM DIS, 23(8), 1030-1039.

DOI: 10.1111/1756-185X.13913

The rate of bone loss slows after 1–2 years of initial antiretroviral therapy: final results of the Strategic Timing of Antiretroviral Therapy (START) bone mineral density substudy

Carr, A.; Grund, B.; Schwartz, A. V.; Avihingsanon, A.; Badal-Faesen, S.; Bernadino, J. I.; Estrada, V.; La Rosa, A.; Mallon, P. W.G.; Pujari, S.; White, D.; Wyman Engen, N.; Ensrud, K.; Hoy, J. F.; ,

(2020), HIV MED, 21, 64-70

DOI: 10.1111/hiv.12796

The Potential Impact of a Gel-Based Point-of-Sex Intervention in Reducing Gonorrhea Incidence among Gay and Bisexual Men

Traeger, Michael W.; Tidhar, Tom; Holt, Martin; Williams, Chris; Wright, Edwina J.; Stoové, Mark A.; Scott, Nick; Hellard, Margaret E.

(2020), SEX TRANSM DIS, 47(10), 649-657.

DOI: 10.1097/OLQ.0000000000001239

The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns

Repetti, Sonja I.; Jackson, Christopher J.; Judd, Louise M.; Wick, Ryan R.; Holt, Kathryn E.; Verbruggen, Heroen

(2020), PEERJ, 2020(1), 8273

DOI: 10.7717/peerj.8273

Testing of the WHO Infection Prevention and Control Assessment Framework at acute healthcare facility level

Tomczyk, S.; Aghdassi, S.; Storr, J.; Hansen, S.; Stewardson, A. J.; Bischoff, P.; Gastmeier, P.; Allegranzi, B.

(2020), J HOSP INFECT, 105(1), 83-90.

DOI: 10.1016/j.jhin.2019.12.016

Systems biology and big data in asthma and allergy: recent discoveries and emerging challenges

Tang, Howard H.F.; Sly, Peter D.; Holt, Patrick G.; Holt, Kathryn E.; Inouye, Michael

(2020), EUR RESPIR J, 55(1), 1900844

DOI: 10.1183/13993003.00844-2019

Switch from tenofovir disoproxil fumarate to raltegravir is not associated with weight gain over 96 weeks

Carr, Mirella; Richardson, Robyn; Tong, Winnie; Bloch, Mark; Baker, David; Hoy, Jennifer F.; ,

(2020), AIDS, 34(5), 789-790.

DOI: 10.1097/QAD.0000000000002473

Survey and Sequence Characterization of Bovine Mastitis-Associated Escherichia coli in Dairy Herds

Alawneh, John I.; Vezina, Ben; Ramay, Hena R.; Al-Harbi, Hulayyil; James, Ameh S.; Soust, Martin; Moore, Robert J.; Olchowy, Timothy W.J.

(2020), FRONT VET SCI, 7, 582297

DOI: 10.3389/fvets.2020.582297

Shigella sonnei

Torraca, Vincenzo; Holt, Kathryn; Mostowy, Serge

(2020), TRENDS MICROBIOL, 28(8), 696-697.

DOI: 10.1016/j.tim.2020.02.011

Salmonella enterica Serovar Hvittingfoss in Bar-Tailed Godwits (Limosa lapponica) from Roebuck Bay, Northwestern Australia

Smith, Hannah G.; Bean, David C.; Hawkey, Jane; Clarke, Rohan H.; Loyn, Richard; Larkins, Jo Ann; Hassell, Chris; Valcanis, Mary; Pitchers, William; Greenhill, Andrew R.

(2020), APPL ENVIRON MICROB, 86(19)

DOI: 10.1128/AEM.01312-20

Remdesivir for the Treatment of Covid-19 - Preliminary Report

McMahon, James H.; Udy, Andrew; Peleg, Anton Y.

(2020), NEW ENGL J MED, 383(10), 992-993.

DOI: 10.1056/NEJMc2022236

Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets

Vezina, Ben; Petit, Guillaume A.; Martin, Jennifer L.; Halili, Maria A.

(2020), PLOS ONE, 15, e0241306.

DOI: 10.1371/journal.pone.0241306

Predicting phenotypic polymyxin resistance in Klebsiella pneumoniae through machine learning analysis of genomic data

Macesic, Nenad; Bear Don't Walk, Oliver J.; Pe'er, Itsik; Tatonetti, Nicholas P.; Peleg, Anton Y.; Uhlemann, Anne Catrin; Uhlemann, Anne Catrin

(2020), MSYSTEMS, 5(3), e00656-19.

DOI: 10.1128/mSystems.00656-19

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016

Rahman, Sadia Isfat Ara; Dyson, Zoe A.; Klemm, Elizabeth J.; Khanam, Farhana; Holt, Kathryn E.; Chowdhury, Emran Kabir; Dougan, Gordon; Qadri, Firdausi

(2020), PLOS NEGLECT TROP D, 14(2), e0008036.

DOI: 10.1371/journal.pntd.0008036

Population genomics of Klebsiella pneumoniae

Wyres, Kelly L.; Lam, Margaret M.C.; Holt, Kathryn E.

(2020), NAT REV MICROBIOL, 18(6), 344-359.

DOI: 10.1038/s41579-019-0315-1

Perspectives on Analytical Treatment Interruptions in People Living with HIV and Their Health Care Providers in the Landscape of HIV Cure-Focused Studies

Lau, Jillian S.Y.; Smith, Miranda Z.; Allan, Brent; Martinez, Cipriano; Power, Jennifer; Lewin, Sharon R.; McMahon, James H.

(2020), AIDS RES HUM RETROV, 36(4), 260-267.

DOI: 10.1089/AID.2019.0118

Persistent circulation of a fluoroquinolone-resistant Salmonella enterica Typhi clone in the Indian subcontinent

Britto, Carl D.; Dyson, Zoe A.; Mathias, Sitarah; Bosco, Ashish; Dougan, Gordon; Jose, Sanju; Nagaraj, Savitha; Holt, Kathryn E.; Pollard, Andrew J.

(2020), J ANTIMICROB CHEMOTH, 75(2), 337-341.

DOI: 10.1093/jac/dkz435

Pathogen genomic surveillance of typhoidal Salmonella infection in adults and children reveals no association between clinical outcomes and infecting genotypes

Britto, Carl D.; Mathias, Sitarah; Bosco, Ashish; Dyson, Zoe A.; Dougan, Gordon; Raveendran, Savitha; Abin, V. L.; Jose, Sanju; Nagaraj, Savitha; Holt, Kathryn E.; Pollard, Andrew J.

(2020), Tropical Medicine and Health, 48(1), 58

DOI: 10.1186/s41182-020-00247-2

Oral fosfomycin treatment for enterococcal urinary tract infections in a dynamic in vitro model

Abbott, Iain J.; van Gorp, Elke; van der Meijden, Aart; Wijma, Rixt A.; Meletiadis, Joseph; Roberts, Jason A.; Mouton, Johan W.; Peleg, Anton Y.

(2020), ANTIMICROB AGENTS CH, 64(6), e00342-20.

DOI: 10.1128/AAC.00342-20